FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21383183
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA286100.09.01496394-95
AGCGTCG110000.08.93839794-95
GATCGGA310900.08.89932894-95
GCGTCGT99450.08.7642294-95
CGTCGTG95250.08.72680194-95
TCGTGTA80000.08.60914494-95
AGATCGG351350.08.53043994-95
GTCGTGT90600.08.36208394-95
TCGGAAG280700.08.20694294-95
CGTGTAG81500.08.15929194-95
AAGAGCG190350.08.1223294-95
TAGATCG117600.08.11840594-95
GAGCGTC145500.07.90013294-95
AGAGCGT160800.07.7687694-95
CGGAAGA289800.07.61323794-95
CAGATCG132850.06.2568994-95
AAGATCG117800.06.028064794-95
GAGATCG143300.05.767466594-95
GTGTAGG122600.05.26902794-95
GAAGAGC401000.05.063767494-95
Produced by FastQC (version 0.11.5)