EGAF00004721174 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721174
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23627999
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	41230	0.0	8.868939	94-95
ATCGGAA	38255	0.0	8.652446	94-95
AGATCGG	46260	0.0	8.130437	94-95
TAGATCG	14480	0.0	7.8875256	94-95
ACACGTC	14210	0.0	7.7366195	94-95
TCGGAAG	37685	0.0	7.567262	94-95
CGTCTGA	10655	0.0	7.3985896	94-95
CGGAAGA	38160	0.0	7.26773	94-95
CACACGT	17685	0.0	7.156265	94-95
ACGTCTG	13650	0.0	6.871139	94-95
AAGATCG	15300	0.0	6.626752	94-95
GCACACG	21070	0.0	6.4573507	94-95
CACGTCT	15680	0.0	6.3904386	94-95
CAGATCG	15710	0.0	6.18175	94-95
AGAGCAC	34260	0.0	5.7524786	94-95
GAGATCG	19590	0.0	5.466463	94-95
AGCACAC	30125	0.0	5.383416	94-95
GAGCACA	35280	0.0	5.296762	94-95
GAAGAGC	49730	0.0	5.0659537	94-95