FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23627999
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG133900.09.194194-95
GCGTCGT142550.09.1863894-95
AGCGTCG162200.08.99658294-95
GATCGGA410600.08.83274594-95
ATCGGAA381050.08.56968494-95
GAGCGTC203850.08.48751894-95
GTCGTGT123950.08.41740194-95
TCGTGTA108750.08.37007994-95
AGAGCGT221250.08.21747194-95
CGTGTAG108500.08.12651394-95
AGATCGG461900.08.11416394-95
TAGATCG135050.07.813550594-95
AAGAGCG263700.07.76885894-95
TCGGAAG376900.07.47226594-95
CGGAAGA377200.07.34660994-95
AAGATCG156700.06.30930692-93
CAGATCG172650.05.91918594-95
GAGATCG192300.05.80869694-95
GTGTAGG150700.05.63008694-95
GAAGAGC496750.05.061833494-95
Produced by FastQC (version 0.11.5)