EGAF00004721198 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721198
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21362833
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	33380	0.0	9.142562	94-95
ATCGGAA	30935	0.0	8.966932	94-95
AGATCGG	37845	0.0	8.597322	94-95
TCGGAAG	30390	0.0	8.549441	94-95
TAGATCG	11445	0.0	8.051319	94-95
CGGAAGA	31015	0.0	7.841142	94-95
ACACGTC	11085	0.0	7.798603	94-95
CACACGT	14105	0.0	7.088595	94-95
CACGTCT	12230	0.0	6.9131293	94-95
AAGATCG	13560	0.0	6.7780128	94-95
ACGTCTG	10705	0.0	6.655577	94-95
GCACACG	16435	0.0	6.632757	94-95
CGTCTGA	8395	0.0	6.3935027	94-95
CAGATCG	13585	0.0	6.3459716	94-95
AGAGCAC	28690	0.0	5.73659	94-95
GAGATCG	16045	0.0	5.5950403	94-95
GAAGAGC	41450	0.0	5.208234	94-95
GAGCACA	28920	0.0	5.083274	94-95
AGCACAC	24410	0.0	5.039798	94-95