EGAF00004721199 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721199
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21362833
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	10320	0.0	9.276311	94-95
TCGTGTA	8275	0.0	9.243529	94-95
GCGTCGT	10805	0.0	9.211688	94-95
GATCGGA	32950	0.0	9.148632	94-95
ATCGGAA	30640	0.0	8.931279	94-95
AGCGTCG	12160	0.0	8.810346	94-95
GAGCGTC	15235	0.0	8.653672	94-95
AGATCGG	37460	0.0	8.541807	94-95
GTCGTGT	9550	0.0	8.5069275	94-95
AGAGCGT	17100	0.0	8.501691	94-95
TCGGAAG	30780	0.0	8.219227	94-95
AAGAGCG	20450	0.0	8.131201	94-95
CGTGTAG	8180	0.0	7.9279213	94-95
TAGATCG	11545	0.0	7.9216704	94-95
CGGAAGA	31170	0.0	7.720094	94-95
AAGATCG	13010	0.0	6.5914335	94-95
CAGATCG	14275	0.0	6.1238093	94-95
GAGATCG	15410	0.0	5.8269205	94-95
GAAGAGC	41555	0.0	5.1619577	94-95