FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20367924
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG104150.09.37191194-95
GCGTCGT89400.08.92580494-95
TCGTGTA70000.08.78713694-95
CGTCGTG86350.08.74601894-95
AGATCGG318150.08.7262694-95
GATCGGA279550.08.67384894-95
ATCGGAA259750.08.63101994-95
GTCGTGT79300.08.38552894-95
GAGCGTC137050.08.33511594-95
AGAGCGT150350.07.8979194-95
TCGGAAG255400.07.866744594-95
CGTGTAG75600.07.6964494-95
TAGATCG103050.07.536077594-95
AAGAGCG180600.07.534986594-95
CGGAAGA266950.07.517482394-95
AAGATCG112050.06.95196594-95
CAGATCG121500.06.7826494-95
GAGATCG132200.06.00012994-95
Produced by FastQC (version 0.11.5)