EGAF00004721214 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721214
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22497547
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	31550	0.0	9.135529	94-95
GATCGGA	33955	0.0	9.075809	94-95
AGATCGG	37875	0.0	8.268115	94-95
TCGGAAG	31375	0.0	8.17249	94-95
ACACGTC	11705	0.0	8.093118	94-95
TAGATCG	12055	0.0	7.8778396	94-95
CGGAAGA	31680	0.0	7.366865	94-95
CGTCTGA	8905	0.0	7.1985364	94-95
CACACGT	14860	0.0	6.9020686	94-95
AAGATCG	13400	0.0	6.661889	94-95
ACGTCTG	10965	0.0	6.53902	94-95
GCACACG	17390	0.0	6.321145	94-95
CACGTCT	12690	0.0	6.2301283	94-95
GAGATCG	15585	0.0	6.169679	94-95
CAGATCG	14195	0.0	5.971001	94-95
AGAGCAC	30060	0.0	5.37864	94-95
AGCACAC	25995	0.0	5.014145	94-95