FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20853065
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA334300.09.37699294-95
GATCGGA364200.09.30486594-95
AGATCGG411350.08.80986194-95
TCGGAAG328500.08.45817194-95
TAGATCG124550.07.74120194-95
CGGAAGA331150.07.551437494-95
ACACGTC119600.07.545333494-95
AAGATCG137850.07.407773594-95
CGTCTGA86800.07.277595594-95
GCACACG176050.07.01444594-95
CACACGT152050.06.903381394-95
CACGTCT124050.06.89178594-95
CAGATCG151350.06.794092794-95
ACGTCTG107300.06.772479594-95
GAGATCG167300.06.21733494-95
AGAGCAC293800.06.03802494-95
AGCACAC254000.05.563002694-95
GAAGAGC433450.05.26514694-95
AAGAGCA388150.05.200502494-95
GAGCACA304000.05.155803794-95
Produced by FastQC (version 0.11.5)