EGAF00004721226 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721226
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20517595
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	26890	0.0	8.149789	94-95
ACACGTC	10365	0.0	8.109039	94-95
GATCGGA	28615	0.0	8.056769	94-95
AGATCGG	32055	0.0	7.9254403	94-95
TCGGAAG	27040	0.0	7.902623	94-95
TAGATCG	10745	0.0	7.844357	94-95
CACACGT	13400	0.0	7.548145	94-95
CGGAAGA	27375	0.0	7.450312	94-95
GCACACG	15095	0.0	7.093798	94-95
CGTCTGA	7890	0.0	6.6805367	94-95
CACGTCT	10990	0.0	6.502857	94-95
AAGATCG	11620	0.0	6.27289	94-95
GAGATCG	12790	0.0	5.866134	94-95
ACGTCTG	9540	0.0	5.798865	94-95
CAGATCG	11945	0.0	5.505909	94-95
AGAGCAC	26685	0.0	5.0893726	94-95