EGAF00004721235 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721235
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24014958
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	11160	0.0	9.385184	94-95
CGTCGTG	9045	0.0	9.347809	94-95
GCGTCGT	9835	0.0	9.2972555	94-95
GATCGGA	30675	0.0	8.981354	94-95
ATCGGAA	28590	0.0	8.930232	94-95
AGATCGG	34660	0.0	8.394135	94-95
TCGGAAG	28460	0.0	8.378518	94-95
TAGATCG	11010	0.0	8.261899	94-95
GTCGTGT	8835	0.0	8.118369	94-95
TCGTGTA	7935	0.0	8.111306	94-95
AAGAGCG	19025	0.0	7.8772225	94-95
GAGCGTC	14120	0.0	7.821439	94-95
CGGAAGA	29235	0.0	7.6689754	94-95
AGAGCGT	15960	0.0	7.6637754	94-95
CGTGTAG	8160	0.0	7.33464	94-95
CAGATCG	13125	0.0	6.405785	94-95
AAGATCG	13370	0.0	5.9686522	94-95
GAGATCG	15875	0.0	5.1913958	94-95