EGAF00004721294 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721294
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22340346
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	33355	0.0	8.883209	94-95
GATCGGA	36335	0.0	8.703528	94-95
AGATCGG	40590	0.0	7.9549265	94-95
TCGGAAG	33390	0.0	7.949535	94-95
ACACGTC	12825	0.0	7.4974566	94-95
TAGATCG	12455	0.0	7.2436285	94-95
CGGAAGA	33035	0.0	7.158159	94-95
CGTCTGA	9610	0.0	7.041055	94-95
CACGTCT	13335	0.0	6.7300005	94-95
CACACGT	15965	0.0	6.692061	94-95
ACGTCTG	12155	0.0	6.406712	94-95
GCACACG	18790	0.0	6.3808846	94-95
AAGATCG	13790	0.0	6.335777	94-95
CAGATCG	14580	0.0	5.650518	94-95
AGAGCAC	31015	0.0	5.5881414	94-95
GAGATCG	16555	0.0	5.420994	94-95
AGCACAC	27310	0.0	5.320421	94-95
GAGCACA	32120	0.0	5.115014	94-95
GAAGAGC	45125	0.0	5.093009	94-95