FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23663119
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA378550.09.16300194-95
GATCGGA407100.08.975286594-95
ACACGTC134000.08.77023394-95
TCGGAAG371950.08.71920694-95
AGATCGG458600.08.38153694-95
TAGATCG145500.08.20759294-95
CGGAAGA370200.07.99083994-95
CACACGT166700.07.534090594-95
CGTCTGA97800.07.40409194-95
CACGTCT138450.07.082194394-95
GCACACG199650.07.051737394-95
ACGTCTG121200.06.38595394-95
CAGATCG159650.06.2458992-93
AAGATCG157150.06.163913794-95
GAGATCG191600.05.737150794-95
AGAGCAC329500.05.73546294-95
AGCACAC290350.05.44581994-95
GAAGAGC483650.05.38991594-95
GAGCACA339800.05.10745894-95
AAGAGCA446450.05.04666194-95
Produced by FastQC (version 0.11.5)