EGAF00004721366 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721366
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23178533
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	37435	0.0	8.574485	94-95
ATCGGAA	34830	0.0	8.500064	94-95
AGATCGG	42000	0.0	7.9929905	94-95
TCGGAAG	34900	0.0	7.959204	94-95
ACACGTC	13895	0.0	7.6205363	94-95
CGGAAGA	35515	0.0	7.420281	94-95
CGTCTGA	10015	0.0	7.3251534	94-95
TAGATCG	13010	0.0	7.2994795	94-95
CACACGT	16910	0.0	7.0901747	94-95
ACGTCTG	12595	0.0	6.559795	94-95
CACGTCT	14555	0.0	6.2962832	94-95
GCACACG	19900	0.0	6.227685	94-95
CAGATCG	15590	0.0	5.939197	94-95
AAGATCG	14245	0.0	5.749974	94-95
AGAGCAC	32675	0.0	5.6819887	94-95
GAGATCG	17855	0.0	5.6378717	94-95
AGCACAC	28340	0.0	5.0180635	94-95
GAGCACA	33170	0.0	5.0174346	94-95