EGAF00004721367 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721367
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23178533
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	12590	0.0	9.191273	94-95
GTCGTGT	11480	0.0	9.189958	94-95
TCGTGTA	10015	0.0	8.920913	94-95
GCGTCGT	13570	0.0	8.720109	94-95
AGCGTCG	14840	0.0	8.566281	94-95
ATCGGAA	34765	0.0	8.495742	94-95
GATCGGA	37535	0.0	8.46384	94-95
AGAGCGT	20855	0.0	8.100873	94-95
AGATCGG	42265	0.0	7.887679	94-95
GAGCGTC	18820	0.0	7.8405113	94-95
TCGGAAG	34905	0.0	7.801344	94-95
CGTGTAG	10245	0.0	7.769718	94-95
AAGAGCG	24390	0.0	7.404133	94-95
TAGATCG	12470	0.0	7.259905	94-95
CGGAAGA	35615	0.0	7.2455153	94-95
CAGATCG	16350	0.0	5.667862	94-95
AAGATCG	14405	0.0	5.6578746	94-95
GAGATCG	17680	0.0	5.4968443	94-95
GTGTAGG	14610	0.0	5.334529	94-95