FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19788206
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA281600.09.21657694-95
GATCGGA306500.09.19540694-95
AGATCGG347100.08.65978294-95
TCGGAAG277950.08.62917894-95
TAGATCG113300.08.01962194-95
ACACGTC99700.07.99519594-95
CGGAAGA278800.07.913618694-95
CAGATCG120400.06.975281294-95
CGTCTGA78100.06.743523694-95
CACACGT127000.06.706187294-95
AAGATCG127950.06.3411994-95
GCACACG144550.06.30228594-95
ACGTCTG94450.06.254352694-95
CACGTCT110100.06.248785594-95
AGAGCAC253350.05.80571594-95
GAGATCG136750.05.77699394-95
AGCACAC225900.05.17744794-95
GAAGAGC374550.05.098835594-95
AAGAGCA355750.05.028186394-95
GAGCACA258250.05.024952494-95
Produced by FastQC (version 0.11.5)