FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21881085
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG129300.010.06510394-95
CGTCGTG105850.09.64747794-95
GCGTCGT112800.09.30570694-95
GTCGTGT97400.09.26532894-95
GAGCGTC167100.09.03892694-95
TCGTGTA85400.08.98216194-95
ATCGGAA333950.08.92479994-95
GATCGGA361050.08.79427894-95
AGATCGG409600.08.60419394-95
TCGGAAG325200.08.42005594-95
AGAGCGT182950.08.29477594-95
AAGAGCG219250.08.16710194-95
CGGAAGA334200.08.13645594-95
TAGATCG125400.07.99191994-95
CGTGTAG83850.07.873682594-95
AAGATCG145400.06.84361994-95
CAGATCG147450.06.249181794-95
GAGATCG160500.06.06659594-95
GTGTAGG122300.05.242923394-95
GAAGAGC438850.05.10307394-95
Produced by FastQC (version 0.11.5)