EGAF00004721393 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721393
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21341285
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	7820	0.0	9.539253	94-95
AGCGTCG	11025	0.0	9.330411	94-95
GCGTCGT	9875	0.0	9.069757	94-95
ATCGGAA	28105	0.0	8.833324	94-95
GTCGTGT	8700	0.0	8.820125	94-95
GATCGGA	30070	0.0	8.714321	94-95
CGTCGTG	9345	0.0	8.618106	94-95
TAGATCG	11030	0.0	8.400024	94-95
AAGAGCG	19025	0.0	8.304021	94-95
AGATCGG	34100	0.0	8.27663	94-95
AGAGCGT	16020	0.0	8.20076	94-95
GAGCGTC	14530	0.0	8.109752	94-95
TCGGAAG	27865	0.0	8.1079855	94-95
CGTGTAG	7825	0.0	7.6811743	94-95
CGGAAGA	28620	0.0	7.462451	94-95
AAGATCG	12840	0.0	6.5128207	94-95
CAGATCG	12990	0.0	5.7426453	94-95
GAGATCG	13910	0.0	5.704411	94-95