FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23119679
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA374750.08.80691794-95
GATCGGA400100.08.62872594-95
ACACGTC134750.08.24646594-95
TCGGAAG365850.08.235867594-95
AGATCGG448450.07.857250794-95
CGGAAGA367550.07.713271694-95
TAGATCG134500.07.60861794-95
CGTCTGA100250.07.436969394-95
CACACGT171200.07.01774394-95
GCACACG198550.06.97187294-95
CACGTCT146550.06.83718694-95
ACGTCTG125950.06.44731294-95
CAGATCG163450.06.362677694-95
AGAGCAC325800.06.245691394-95
AAGATCG156650.06.16899994-95
GAGATCG185800.05.86567194-95
AGCACAC284150.05.481594694-95
GAGCACA333200.05.40863394-95
GAAGAGC474850.05.15028894-95
AAGAGCA440150.05.09778994-95
Produced by FastQC (version 0.11.5)