EGAF00004721422 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721422
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25298162
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	43100	0.0	8.289898	94-95
AGATCGG	48255	0.0	8.102914	94-95
ATCGGAA	40050	0.0	8.055767	94-95
CGGAAGA	40035	0.0	7.993556	94-95
CGTCTGA	11450	0.0	7.982615	94-95
TCGGAAG	40090	0.0	7.9352145	94-95
TAGATCG	16135	0.0	7.812958	94-95
ACACGTC	15105	0.0	7.7484736	94-95
ACGTCTG	14085	0.0	7.315143	94-95
CACACGT	18695	0.0	7.136755	94-95
CACGTCT	16040	0.0	6.689967	94-95
GCACACG	21780	0.0	6.550984	94-95
AAGATCG	17030	0.0	6.4544063	94-95
CAGATCG	16710	0.0	6.052337	94-95
GAGATCG	18340	0.0	5.7862625	94-95
AGAGCAC	36480	0.0	5.440532	94-95
AGCACAC	31915	0.0	5.0582933	94-95
GAAGAGC	51975	0.0	5.029013	94-95