EGAF00004721423 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721423
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25298162
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	14320	0.0	8.928239	94-95
TCGTGTA	11920	0.0	8.891706	94-95
GCGTCGT	15480	0.0	8.796506	94-95
AGCGTCG	16885	0.0	8.796411	94-95
CGTGTAG	11860	0.0	8.676203	94-95
GTCGTGT	13200	0.0	8.551577	94-95
GATCGGA	43275	0.0	8.2317295	94-95
AGATCGG	48620	0.0	8.030621	94-95
ATCGGAA	40020	0.0	7.9927177	94-95
TCGGAAG	40290	0.0	7.8329854	94-95
AGAGCGT	23550	0.0	7.8003683	94-95
GAGCGTC	21205	0.0	7.800052	94-95
CGGAAGA	40525	0.0	7.7230573	94-95
AAGAGCG	27330	0.0	7.512779	94-95
TAGATCG	14885	0.0	7.3919444	94-95
CAGATCG	17895	0.0	6.201714	94-95
AAGATCG	17285	0.0	6.063114	94-95
GTGTAGG	16295	0.0	5.8918753	94-95
GAGATCG	19940	0.0	5.6729417	94-95