FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20404669
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG108300.010.31146194-95
GCGTCGT95650.09.86180394-95
TCGTGTA76650.09.26850894-95
ATCGGAA287050.09.11340394-95
CGTCGTG88950.09.02862494-95
GATCGGA308850.08.9163494-95
AGATCGG351650.08.82436394-95
GAGCGTC143250.08.70794194-95
GTCGTGT86900.08.64008694-95
AGAGCGT159900.08.58875594-95
TCGGAAG284250.08.57625694-95
AAGAGCG190850.08.25414794-95
CGGAAGA280100.08.12649394-95
CGTGTAG78350.08.06665494-95
TAGATCG112100.07.77877694-95
CAGATCG129850.07.17290394-95
AAGATCG120800.06.98252194-95
GAGATCG141250.05.921135494-95
GTGTAGG117950.05.479258594-95
GAAGAGC375000.05.208244394-95
Produced by FastQC (version 0.11.5)