EGAF00004721450 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721450
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21043405
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	33505	0.0	9.537786	94-95
ATCGGAA	30880	0.0	9.211523	94-95
AGATCGG	37890	0.0	9.066372	94-95
TCGGAAG	30185	0.0	8.724114	94-95
CGGAAGA	29940	0.0	8.454778	94-95
TAGATCG	12185	0.0	8.411002	94-95
ACACGTC	10575	0.0	8.367929	94-95
CACACGT	13105	0.0	7.042099	94-95
CAGATCG	13380	0.0	6.7909765	94-95
GCACACG	15240	0.0	6.553702	94-95
CACGTCT	11355	0.0	6.539533	94-95
CGTCTGA	7735	0.0	6.4716	94-95
AAGATCG	13680	0.0	6.2431817	94-95
GAGATCG	15330	0.0	6.205714	94-95
AGAGCAC	27225	0.0	6.0998573	94-95
ACGTCTG	9690	0.0	6.0473166	94-95
AAGAGCA	38710	0.0	5.3687162	94-95
GAAGAGC	40725	0.0	5.3477507	94-95
AGCACAC	23905	0.0	5.0911765	94-95