EGAF00004721451 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721451
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21043405
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	32345	0.0	9.376018	94-95
GTCGTGT	8775	0.0	9.30992	94-95
AGCGTCG	11320	0.0	9.272792	94-95
ATCGGAA	29880	0.0	9.2196	94-95
CGTCGTG	9300	0.0	9.218472	94-95
AAGAGCG	19740	0.0	8.998894	94-95
TCGTGTA	7745	0.0	8.800253	94-95
AGATCGG	36815	0.0	8.753661	94-95
GCGTCGT	9740	0.0	8.582509	92-93
GAGCGTC	14645	0.0	8.335054	94-95
AGAGCGT	16155	0.0	8.232197	94-95
CGGAAGA	29965	0.0	8.218625	94-95
TCGGAAG	28875	0.0	8.125865	94-95
TAGATCG	11105	0.0	7.677336	94-95
CGTGTAG	7640	0.0	7.429152	94-95
AAGATCG	13315	0.0	7.116499	94-95
CAGATCG	13515	0.0	6.343455	94-95
GAGATCG	14960	0.0	6.191098	94-95
GAAGAGC	40145	0.0	5.081552	94-95