EGAF00004721488 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721488
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21585929
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	33090	0.0	9.061555	94-95
GATCGGA	35385	0.0	8.728794	94-95
TCGGAAG	32735	0.0	8.72468	94-95
AGATCGG	39860	0.0	8.290832	94-95
TAGATCG	12575	0.0	8.2691765	94-95
CGGAAGA	33105	0.0	8.17537	94-95
ACACGTC	11780	0.0	8.000947	94-95
CGTCTGA	8680	0.0	7.7677417	94-95
ACGTCTG	10435	0.0	7.3258758	94-95
CACACGT	14615	0.0	7.0662107	94-95
CACGTCT	12290	0.0	6.9348764	94-95
CAGATCG	14100	0.0	6.9202037	94-95
AAGATCG	13980	0.0	6.4191985	94-95
GCACACG	17535	0.0	6.3498464	94-95
GAGATCG	15910	0.0	6.013551	94-95
AGAGCAC	29560	0.0	5.798677	94-95
AGCACAC	25605	0.0	5.526086	94-95
GAGCACA	30230	0.0	5.198954	94-95