FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20092037
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA353450.09.33254194-95
GATCGGA381900.09.18412794-95
TCGGAAG339750.08.95450794-95
TAGATCG141650.08.79540494-95
AGATCGG434150.08.7238194-95
CGGAAGA333950.08.47047894-95
ACACGTC112650.08.46852994-95
GCACACG164550.07.888646694-95
CACACGT144200.07.866394594-95
CGTCTGA84000.07.74077394-95
AAGATCG151750.07.60012494-95
CACGTCT121750.07.42624294-95
ACGTCTG102550.07.24305594-95
CAGATCG144300.07.055114794-95
GAGATCG160450.06.59641994-95
AGAGCAC292050.06.394853694-95
AGCACAC253500.06.11291494-95
GAGCACA294700.05.854197594-95
GAAGAGC424650.05.744802594-95
AAGAGCA397550.05.646930794-95
Produced by FastQC (version 0.11.5)