FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20092037
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG131450.010.24395294-95
CGTCGTG106050.09.8982194-95
GCGTCGT112750.09.75235594-95
TCGTGTA85750.09.72115894-95
GTCGTGT96400.09.48481294-95
ATCGGAA343350.09.24090494-95
GATCGGA372600.09.0763794-95
AAGAGCG221000.09.05900294-95
GAGCGTC167450.09.034494-95
AGAGCGT184350.08.70860594-95
CGTGTAG84100.08.66936894-95
AGATCGG421550.08.65904194-95
TAGATCG134450.08.53161794-95
CGGAAGA332150.08.30839194-95
TCGGAAG328750.08.29318194-95
AAGATCG144600.07.17725294-95
CAGATCG143850.07.066086394-95
GAGATCG160800.06.6609494-95
GAAGAGC416700.05.56821794-95
GTGTAGG122700.05.535622694-95
Produced by FastQC (version 0.11.5)