EGAF00004721507 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721507
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21771019
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	12905	0.0	9.702751	94-95
GCGTCGT	11135	0.0	9.217982	94-95
CGTCGTG	10550	0.0	9.166093	94-95
GTCGTGT	9815	0.0	8.9326105	94-95
TCGTGTA	8765	0.0	8.809956	94-95
TAGATCG	11795	0.0	8.581318	94-95
ATCGGAA	30650	0.0	8.550418	94-95
AGATCGG	37220	0.0	8.534879	94-95
GAGCGTC	16435	0.0	8.457236	94-95
GATCGGA	32775	0.0	8.402008	94-95
TCGGAAG	30620	0.0	8.271691	94-95
AGAGCGT	18120	0.0	8.064161	94-95
CGTGTAG	9015	0.0	7.8540354	94-95
CGGAAGA	30780	0.0	7.642032	94-95
AAGAGCG	21455	0.0	7.3422184	94-95
AAGATCG	13145	0.0	6.9227796	94-95
CAGATCG	13765	0.0	5.955047	94-95
GAGATCG	15510	0.0	5.9437733	94-95
GTGTAGG	12625	0.0	5.213036	94-95