EGAF00004721511 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721511
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21925561
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	10130	0.0	9.685857	94-95
AGCGTCG	12505	0.0	9.081166	94-95
GCGTCGT	10890	0.0	9.053523	94-95
GTCGTGT	9590	0.0	8.943056	94-95
TCGTGTA	8345	0.0	8.569146	94-95
ATCGGAA	30160	0.0	8.51514	94-95
TCGGAAG	30275	0.0	8.427864	94-95
GATCGGA	32610	0.0	8.348938	94-95
AGATCGG	36785	0.0	8.344285	94-95
GAGCGTC	15705	0.0	8.062815	94-95
CGGAAGA	30735	0.0	7.876592	94-95
AAGAGCG	20655	0.0	7.809837	94-95
CGTGTAG	8765	0.0	7.7248545	94-95
AGAGCGT	17600	0.0	7.680633	94-95
TAGATCG	11610	0.0	7.284759	94-95
AAGATCG	13045	0.0	6.501619	94-95
CAGATCG	13860	0.0	6.2050138	94-95
GAGATCG	15280	0.0	5.3174095	94-95
GTGTAGG	12570	0.0	5.2731037	94-95