FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19519013
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA408550.09.25210994-95
TCGGAAG397150.09.10517394-95
GATCGGA445600.09.02632894-95
ACACGTC136450.08.92661394-95
CGTCTGA97000.08.71407194-95
TAGATCG156700.08.34882794-95
CGGAAGA389300.08.34342994-95
AGATCGG496850.08.29119494-95
CACACGT170300.07.960939494-95
CACGTCT140650.07.934160794-95
ACGTCTG121850.07.89173294-95
GCACACG199900.07.69670994-95
CAGATCG164850.06.639797794-95
AGCACAC283900.06.55682494-95
AAGATCG159600.06.47141594-95
GAGATCG188500.06.14683294-95
AGAGCAC328200.06.127561694-95
GAGCACA327350.05.896863594-95
GAAGAGC468050.05.798248394-95
AAGAGCA430150.05.668829494-95
Produced by FastQC (version 0.11.5)