FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20476027
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC136100.08.34524194-95
GATCGGA385050.08.28259994-95
ATCGGAA360000.08.04878294-95
AGATCGG428700.07.87622394-95
TAGATCG140000.07.57078694-95
TCGGAAG351750.07.428634694-95
CACACGT166000.07.39917394-95
CGTCTGA103450.07.357597494-95
CGGAAGA350950.07.350978494-95
CACGTCT142950.06.933517594-95
GCACACG189200.06.91798294-95
ACGTCTG124950.06.58498494-95
AAGATCG139600.06.38651594-95
CAGATCG149450.06.219445794-95
AGCACAC272600.05.967051594-95
AGAGCAC314250.05.62137494-95
GAGATCG153800.05.457684594-95
GAGCACA314700.05.41743494-95
GAAGAGC449500.05.21181294-95
AAGAGCA422850.05.035603594-95
Produced by FastQC (version 0.11.5)