EGAF00004721534 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721534
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19465083
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	13045	0.0	8.554931	94-95
GATCGGA	37685	0.0	8.25402	94-95
TAGATCG	12700	0.0	8.2451315	94-95
AGATCGG	42185	0.0	8.144665	94-95
ATCGGAA	34835	0.0	8.124997	94-95
TCGGAAG	34405	0.0	7.7917514	94-95
CGTCTGA	10000	0.0	7.7169566	94-95
CACACGT	16190	0.0	7.538397	94-95
CGGAAGA	34390	0.0	7.443022	94-95
ACGTCTG	11885	0.0	7.0324426	94-95
CACGTCT	13770	0.0	7.0181584	94-95
GCACACG	18645	0.0	6.8259816	94-95
CAGATCG	14360	0.0	6.217219	94-95
GAGATCG	17135	0.0	6.2080703	94-95
AAGATCG	13425	0.0	5.9073796	94-95
AGAGCAC	31115	0.0	5.753926	94-95
GAGCACA	31570	0.0	5.640913	94-95
AGCACAC	26520	0.0	5.497403	94-95
GAAGAGC	44145	0.0	5.212007	94-95