FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23486465
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC213400.09.35864294-95
TCGGAAG627250.08.91203794-95
ATCGGAA654550.08.85959894-95
GATCGGA715500.08.76536494-95
CACGTCT213300.08.75070394-95
CGTCTGA149150.08.6136194-95
AGATCGG800500.08.59999394-95
ACGTCTG183150.08.59642394-95
CACACGT263950.08.56498294-95
CGGAAGA600800.08.55734894-95
TAGATCG233650.08.18165894-95
GCACACG304450.08.05741294-95
CAGATCG266800.07.26299294-95
AGAGCAC487100.07.24943394-95
AAGATCG239350.06.855763494-95
AGCACAC416800.06.80280294-95
GAGCACA482150.06.673725694-95
GAGATCG291450.06.63241394-95
GAAGAGC657200.06.363162594-95
AAGAGCA601400.06.30203394-95
Produced by FastQC (version 0.11.5)