EGAF00004721540 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721540
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21100624
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	31540	0.0	8.981581	94-95
ATCGGAA	29505	0.0	8.916988	94-95
TAGATCG	11415	0.0	8.778303	94-95
AGATCGG	35595	0.0	8.50541	94-95
TCGGAAG	29340	0.0	8.133548	94-95
ACACGTC	10660	0.0	8.085809	94-95
CGGAAGA	29350	0.0	7.370286	94-95
CAGATCG	13000	0.0	6.88608	94-95
CGTCTGA	8035	0.0	6.8856363	94-95
CACACGT	13955	0.0	6.840224	94-95
CACGTCT	11910	0.0	6.718807	94-95
GCACACG	16355	0.0	6.6059446	94-95
ACGTCTG	10020	0.0	6.2087994	94-95
GAGATCG	14995	0.0	6.175785	94-95
AAGATCG	12895	0.0	5.6531577	94-95
AGAGCAC	27885	0.0	5.6116276	94-95
GAGCACA	28530	0.0	5.1601696	94-95
AGCACAC	24645	0.0	5.07757	94-95