FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23229193
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA299350.08.88261294-95
GATCGGA322750.08.77558594-95
AGATCGG366550.08.6272694-95
TAGATCG120400.08.06489694-95
TCGGAAG300800.08.05052694-95
ACACGTC115750.07.814584794-95
CGGAAGA306200.06.9703894-95
CACACGT147900.06.934537494-95
CGTCTGA90850.06.71599194-95
GCACACG173650.06.61717394-95
AAGATCG135650.06.54566494-95
CACGTCT126350.06.501338594-95
ACGTCTG111950.06.38328694-95
CAGATCG130550.06.38310794-95
AGAGCAC293750.05.52815494-95
GAGATCG150000.05.46046794-95
Produced by FastQC (version 0.11.5)