EGAF00004721557 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721557
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23229193
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	10565	0.0	9.246942	94-95
GCGTCGT	11350	0.0	9.21473	94-95
TCGTGTA	8475	0.0	8.975034	94-95
GTCGTGT	9795	0.0	8.954632	94-95
AGCGTCG	12595	0.0	8.888911	94-95
GATCGGA	32335	0.0	8.850737	94-95
ATCGGAA	29895	0.0	8.801868	94-95
AGATCGG	36595	0.0	8.684313	94-95
AGAGCGT	18060	0.0	8.225988	94-95
CGTGTAG	8720	0.0	8.150429	94-95
TAGATCG	11270	0.0	8.141214	94-95
TCGGAAG	30280	0.0	7.991305	94-95
GAGCGTC	16490	0.0	7.97132	94-95
AAGAGCG	20860	0.0	7.338332	94-95
CGGAAGA	30575	0.0	6.9346437	94-95
AAGATCG	13285	0.0	6.3696303	94-95
CAGATCG	13990	0.0	6.0656347	94-95
GAGATCG	15805	0.0	5.504431	94-95
GTGTAGG	13060	0.0	5.0233297	94-95