FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22279552
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA355000.09.00805294-95
ATCGGAA327850.08.95024694-95
AGATCGG402300.08.40333494-95
TAGATCG122200.08.23732894-95
TCGGAAG328950.07.79445194-95
ACACGTC127100.07.751651394-95
CGGAAGA332800.07.547342394-95
CGTCTGA90600.07.468069694-95
CACACGT155850.07.23566694-95
ACGTCTG113650.07.060556494-95
ACCGCGC52150.06.8310821
GCACACG183550.06.53173794-95
CACGTCT132100.06.469807694-95
AAGATCG132650.06.33559994-95
CAGATCG152650.06.2675894-95
GAGATCG169900.06.022483394-95
AGAGCAC300750.05.920348694-95
GGTTAAC39550.05.7647071
AGCACAC264150.05.401514594-95
CTTAACA88700.05.2477872
Produced by FastQC (version 0.11.5)