FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22279552
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG136200.09.44008394-95
CGTCGTG112950.09.426434594-95
GTCGTGT103900.09.33254994-95
GCGTCGT121950.09.120522594-95
TCGTGTA90750.09.03499994-95
GATCGGA356300.08.94475894-95
ATCGGAA331600.08.75098194-95
AGAGCGT192550.08.43010194-95
CGTGTAG93200.08.261991594-95
AGATCGG405250.08.23965494-95
TAGATCG121350.08.2059794-95
GAGCGTC174450.08.20127194-95
AAGAGCG230900.07.894544694-95
TCGGAAG333000.07.73643294-95
CGGAAGA341000.07.21342794-95
AAGATCG131550.06.630264394-95
CACGTAT29650.06.5651061
CAGATCG158150.06.176298694-95
GTGTAGG133950.05.1985394-95
GAGATCG177550.05.140036694-95
Produced by FastQC (version 0.11.5)