EGAF00004721579 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721579
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25340382
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	14100	0.0	9.15043	94-95
AGCGTCG	15900	0.0	9.055997	94-95
CGTCGTG	13345	0.0	8.742259	94-95
TCGTGTA	10905	0.0	8.563033	94-95
GTCGTGT	12265	0.0	8.175337	94-95
GATCGGA	39275	0.0	8.124948	94-95
ATCGGAA	36260	0.0	7.922446	94-95
AAGAGCG	26040	0.0	7.819889	94-95
AGAGCGT	22010	0.0	7.8159056	94-95
CGTGTAG	11255	0.0	7.7689633	94-95
AGATCGG	43705	0.0	7.752632	94-95
GAGCGTC	19780	0.0	7.6399693	94-95
TAGATCG	13245	0.0	7.4986844	94-95
TCGGAAG	37020	0.0	7.413211	94-95
CGGAAGA	37575	0.0	7.3479786	94-95
GAGATCG	18655	0.0	5.540574	94-95
AAGATCG	15010	0.0	5.461339	94-95
CAGATCG	17025	0.0	5.456955	94-95
GTGTAGG	15730	0.0	5.2566767	94-95