EGAF00004721607 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721607
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22469871
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	11025	0.0	9.332312	94-95
GTCGTGT	10435	0.0	9.176827	94-95
AGCGTCG	13150	0.0	9.052987	94-95
GCGTCGT	11495	0.0	8.930067	94-95
TCGTGTA	9100	0.0	8.408033	94-95
ATCGGAA	31390	0.0	8.3571415	94-95
GAGCGTC	17170	0.0	8.22046	94-95
GATCGGA	33665	0.0	8.173534	94-95
AGATCGG	38250	0.0	8.119404	94-95
AGAGCGT	18375	0.0	7.9917355	94-95
TCGGAAG	32345	0.0	7.5079904	94-95
CGTGTAG	9190	0.0	7.498294	94-95
TAGATCG	11595	0.0	7.480008	94-95
AAGAGCG	22085	0.0	7.2732625	94-95
CGGAAGA	32715	0.0	7.2560215	94-95
AAGATCG	13865	0.0	6.3581977	94-95
CAGATCG	14805	0.0	6.002652	94-95
GAGATCG	16530	0.0	5.505615	94-95
GTGTAGG	13275	0.0	5.262508	94-95