FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21429229
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA397850.08.69177594-95
GATCGGA427500.08.56116894-95
TCGGAAG387400.08.41125994-95
AGATCGG482000.08.34704894-95
CGTCTGA101050.08.20267794-95
CGGAAGA381000.08.10372894-95
ACACGTC133250.08.05633994-95
TAGATCG154600.08.03449794-95
ACGTCTG124450.07.99623694-95
CACACGT169350.07.6572794-95
GCACACG193950.07.48200494-95
CACGTCT142700.07.206599794-95
GAGATCG177800.06.772401394-95
AAGATCG157200.06.738276594-95
CAGATCG166450.06.50650294-95
AGAGCAC334450.06.22070294-95
AGCACAC287750.06.025235794-95
GAGCACA328150.05.710459794-95
GAAGAGC479250.05.555331794-95
AAGAGCA444000.05.509608394-95
Produced by FastQC (version 0.11.5)