FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22088912
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA399100.08.97879394-95
ATCGGAA369850.08.70075194-95
AGATCGG447150.08.53405794-95
TCGGAAG360550.08.51709694-95
CGGAAGA358900.08.2851594-95
TAGATCG145850.08.15180994-95
ACACGTC124250.07.754473794-95
CACACGT155000.07.716521394-95
ACGTCTG118300.07.62292494-95
CGTCTGA92450.07.54680594-95
GCACACG180650.07.54043994-95
CACGTCT131000.06.92013994-95
AAGATCG152750.06.52515494-95
GAGATCG171400.06.25821394-95
CAGATCG152000.06.19825894-95
AGAGCAC318250.06.03257694-95
AGCACAC278050.05.726936394-95
GAGCACA319850.05.50529194-95
GAAGAGC469100.05.41303894-95
AAGAGCA436900.05.12215194-95
Produced by FastQC (version 0.11.5)