FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22088912
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG114750.09.80989594-95
AGCGTCG142150.09.77344694-95
GCGTCGT122850.09.762362594-95
GATCGGA388150.08.82275994-95
ATCGGAA358050.08.69556394-95
TCGTGTA95700.08.685594-95
GAGCGTC178900.08.65517794-95
GTCGTGT108550.08.55432294-95
CGTGTAG94900.08.50846994-95
AGATCGG436400.08.45133794-95
AAGAGCG238450.08.19674194-95
CGGAAGA355450.08.17121594-95
AGAGCGT199900.08.149857594-95
TCGGAAG346350.08.02249494-95
TAGATCG142300.07.610244894-95
AAGATCG147950.06.597289694-95
CAGATCG154850.06.226636494-95
GAGATCG164700.06.070538594-95
GTGTAGG132600.05.37299594-95
GAAGAGC454750.05.27979694-95
Produced by FastQC (version 0.11.5)