FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25912109
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA432550.09.29858194-95
GATCGGA470550.09.11784194-95
TCGGAAG419250.09.0668894-95
AGATCGG528700.08.84701194-95
ACACGTC140150.08.70782494-95
TAGATCG176350.08.58983594-95
CGGAAGA414000.08.37894894-95
CGTCTGA105150.07.767634494-95
CACGTCT150100.07.292221594-95
ACGTCTG126350.07.29115194-95
CACACGT176500.07.25076294-95
GCACACG206650.07.249925694-95
CAGATCG181200.06.866141394-95
AAGATCG180100.06.776243794-95
GAGATCG204250.06.428396794-95
AGAGCAC368350.06.38781994-95
AGCACAC309750.06.00191894-95
GAAGAGC527950.05.73848894-95
GAGCACA365900.05.61946794-95
AAGAGCA504950.05.477938794-95
Produced by FastQC (version 0.11.5)