EGAF00004721682 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721682
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21447748
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	31770	0.0	8.990366	94-95
GATCGGA	33795	0.0	8.788885	94-95
AGATCGG	38455	0.0	8.520307	94-95
TAGATCG	12120	0.0	8.403954	94-95
TCGGAAG	31665	0.0	8.022934	94-95
ACACGTC	11635	0.0	7.468676	94-95
CGGAAGA	31800	0.0	7.167588	94-95
CGTCTGA	9125	0.0	6.895122	94-95
CACACGT	14770	0.0	6.8800597	94-95
CACGTCT	12420	0.0	6.767225	94-95
GCACACG	17560	0.0	6.7198687	94-95
AAGATCG	13200	0.0	6.6731195	94-95
ACGTCTG	10925	0.0	6.628379	94-95
CAGATCG	14305	0.0	6.124455	94-95
GAGATCG	15375	0.0	5.960753	94-95
AGAGCAC	29305	0.0	5.7442517	94-95
GAGCACA	30055	0.0	5.1190248	94-95
AGCACAC	25445	0.0	5.094706	94-95
GAAGAGC	43345	0.0	5.03391	94-95