EGAF00004721698 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721698
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20746692
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

$Per base sequence content$

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	30590	0.0	8.930296	94-95
GATCGGA	32955	0.0	8.857876	94-95
TCGGAAG	29950	0.0	8.558974	94-95
AGATCGG	36980	0.0	8.438823	94-95
TAGATCG	12650	0.0	7.8919525	94-95
ACACGTC	10540	0.0	7.7619586	94-95
CGGAAGA	30250	0.0	7.690179	94-95
GCACACG	15720	0.0	7.0446143	94-95
CACACGT	13785	0.0	6.863711	94-95
CACGTCT	11585	0.0	6.857118	94-95
AAGATCG	12985	0.0	6.4099994	94-95
ACGTCTG	10470	0.0	6.3190293	94-95
CGTCTGA	8345	0.0	6.2231545	94-95
CAGATCG	13060	0.0	6.173459	94-95
GAGATCG	14005	0.0	5.909288	94-95
AGAGCAC	28155	0.0	5.7019844	94-95
AGCACAC	24070	0.0	5.438208	94-95
GAGCACA	28735	0.0	5.3228145	94-95
GAAGAGC	41045	0.0	5.113001	94-95