EGAF00004721699 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721699
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20746692
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	12020	0.0	9.464044	94-95
CGTCGTG	9925	0.0	8.949253	94-95
GCGTCGT	10355	0.0	8.829911	94-95
ATCGGAA	29740	0.0	8.82403	94-95
GAGCGTC	15565	0.0	8.727555	94-95
TCGTGTA	8195	0.0	8.693967	94-95
GATCGGA	32130	0.0	8.677669	94-95
GTCGTGT	9240	0.0	8.533197	94-95
AGATCGG	36130	0.0	8.308541	94-95
AAGAGCG	20175	0.0	8.192969	94-95
TCGGAAG	29010	0.0	7.9490857	94-95
AGAGCGT	16960	0.0	7.911672	94-95
TAGATCG	11945	0.0	7.8136163	94-95
CGGAAGA	29900	0.0	7.5933323	94-95
CGTGTAG	8290	0.0	7.3051863	94-95
CAGATCG	13295	0.0	6.109187	94-95
AAGATCG	11975	0.0	5.7909927	94-95
GAGATCG	14685	0.0	5.708821	94-95
GAAGAGC	40365	0.0	5.053984	94-95