EGAF00004721706 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721706
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20777153
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	33300	0.0	8.323452	94-95
TCGGAAG	32835	0.0	8.238965	94-95
GATCGGA	35515	0.0	8.185195	94-95
ACACGTC	12295	0.0	7.951947	94-95
AGATCGG	40025	0.0	7.903212	94-95
CGGAAGA	33305	0.0	7.6809354	94-95
TAGATCG	13305	0.0	7.61584	94-95
CACACGT	15195	0.0	7.246397	94-95
CGTCTGA	9470	0.0	6.8910837	94-95
GCACACG	17545	0.0	6.5598392	94-95
CACGTCT	13025	0.0	6.431345	94-95
ACGTCTG	11225	0.0	6.405619	94-95
CAGATCG	14215	0.0	6.1433573	94-95
GAGATCG	15645	0.0	6.0672126	94-95
AGAGCAC	29760	0.0	6.052205	94-95
AAGATCG	13445	0.0	6.03629	94-95
GAGCACA	30110	0.0	5.3986435	94-95
AGCACAC	25695	0.0	5.319596	94-95
GAAGAGC	42950	0.0	5.1438856	94-95