FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19880209
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG154700.010.07058494-95
CGTCGTG125050.09.57167794-95
TCGTGTA101250.09.47605394-95
CGTGTAG97300.09.32377294-95
GCGTCGT134850.09.22829594-95
GTCGTGT114000.09.06203294-95
ATCGGAA356050.08.60438694-95
GAGCGTC191350.08.48924194-95
GATCGGA381700.08.29371694-95
AGATCGG426800.08.029494-95
TCGGAAG347300.07.85015694-95
AGAGCGT210000.07.599607594-95
AAGAGCG242800.07.52174994-95
CGGAAGA344250.07.436798694-95
TAGATCG133250.07.41425194-95
AAGATCG141300.07.210349694-95
GAGATCG158300.06.4210294-95
CAGATCG150400.06.047725794-95
GTGTAGG129850.05.92576294-95
TGTAGGG144300.05.003206394-95
Produced by FastQC (version 0.11.5)