FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22847463
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATCTA20800.025.8001654
TCCGATC36250.015.98306752
AGTGGCG76350.014.3063551
TTCCGAT42850.013.4104931
CCGATCT45450.012.7477443
GATCTAG59950.09.5060365
ATCTAGT65400.09.294796
AGTGGCA227250.08.3801291
TAGATCG33350.08.33110494-95
AGTGGCT247300.08.2000021
AGTGGCC202050.08.0385461
TAGTGGC78300.07.64217669
CTAGTGG82400.07.492468
TCTAGTG84150.06.885167
CTTCCGA67700.06.87455754
GTGGCGA58200.06.8543242
GATCGGA39250.05.324214594-95
GTGGCGT53600.05.316122
GCCACTA122300.05.26205594-95
TCTTCCG91200.05.2072993
Produced by FastQC (version 0.11.5)