FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004722693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004722693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23443195
Sequences flagged as poor quality0
Sequence length95
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGCGT47150.047.4660159
TCCGATC60050.042.1618652
CCGATCT66500.038.2731363
TTCCGAT68450.037.378621
CTCCGCG64700.035.07238
ATCTCCG75400.030.3905686
CGATCTC89150.028.1988854
TCTCCGC94650.024.068587
CCGCGTA16800.018.14169310-11
CCGCGTT22250.015.29776210-11
CGCGTAT6200.013.27628410-11
GATCTCC191300.013.0947275
CGCGTAA7400.011.42400510-11
CGCGTTT12600.010.24056510-11
CTTCCGA65700.08.0590984
CGCGTAG11750.07.95202810-11
CGCGTTA5504.6828063E-87.685239310-11
CCGCGTG42600.07.46780410-11
CGATCTA15351.0768417E-96.9566678
CGCGTTG15850.06.87754310-11
Produced by FastQC (version 0.11.5)